What is the hyperchromic effect? How is it measured? What \(\operatorname{does} T_{m}\) imply?

Short Answer

Expert verified
Answer: The hyperchromic effect is the increase in absorbance of UV light by a DNA molecule upon denaturation (or melting), as the unwinding of the double helix into individual strands allows more UV light to be absorbed. It can be measured using a spectrophotometer, by recording the absorbance of a DNA sample over a range of temperatures until the melting temperature (Tm) is determined. Tm, the temperature at which half of the DNA molecules are denatured, is significant for determining the stability of a DNA molecule and predicting optimal temperatures for hybridization and annealing in techniques like PCR and DNA microarrays. Higher Tm values imply higher DNA stability, while lower Tm values indicate lower stability or weaker DNA duplexes.

Step by step solution

01

Definition of Hyperchromic Effect

The hyperchromic effect is the increase in absorbance of UV light by a DNA molecule upon denaturation (or melting). This happens because the DNA double helix unwinds into individual strands when denatured, allowing more UV light to be absorbed.
02

Measuring the Hyperchromic Effect

The hyperchromic effect can be measured using a spectrophotometer, an instrument that measures the absorbance of UV light at various wavelengths. The DNA sample is subjected to increasing temperature while being exposed to UV light. As the temperature increases, more UV light is absorbed by the denatured DNA strands, causing a rise in absorbance. By recording the absorbance of the DNA sample over a range of temperatures, we can determine the temperature at which the DNA molecules are most denatured, which is called the melting temperature (Tm).
03

Implications of Tm (Melting Temperature)

Tm (melting temperature) is defined as the temperature at which half of the DNA molecules in a sample are denatured. The Tm has various implications and applications, such as determining the stability of a DNA molecule, and predicting the optimal temperature for hybridization and annealing in techniques like PCR (Polymerase Chain Reaction) and DNA microarrays. Higher Tm values imply that the DNA has a higher degree of stability, typically due to higher GC content, higher bond strength, and longer lengths, while lower Tm values indicate lower stability or weaker DNA duplexes.

Unlock Step-by-Step Solutions & Ace Your Exams!

  • Full Textbook Solutions

    Get detailed explanations and key concepts

  • Unlimited Al creation

    Al flashcards, explanations, exams and more...

  • Ads-free access

    To over 500 millions flashcards

  • Money-back guarantee

    We refund you if you fail your exam.

Over 30 million students worldwide already upgrade their learning with Vaia!

One App. One Place for Learning.

All the tools & learning materials you need for study success - in one app.

Get started for free

Most popular questions from this chapter

List three main differences between DNA and RNA.

Consider the structure of double-stranded DNA. When DNA is placed into distilled water, it denatures; however, by adding \(\mathrm{NaCl}\), the DNA renatures. Why?

Electrophoresis is an extremely useful procedure when applied to analysis of nucleic acids as it can resolve molecules of different sizes with relative ease and accuracy. Large molecules migrate more slowly than small molecules in agarose gels. However, the fact that nucleic acids of the same length may exist in a variety of conformations can often complicate the interpretation of electrophoretic separations. For instance, when a single species of a bacterial plasmid is isolated from cells, the individual plasmids may exist in three forms (depending on the genotype of their host and conditions of isolation): superhelical/supercoiled (form I), nicked/open circle (form \(\mathrm{II}\) ), and linear (form III). Form I is compact and very tightly coiled, with both DNA strands continuous. Form II exists as a loose circle because one of the two DNA strands has been broken, thus releasing the supercoil. All three have the same mass, but each will migrate at a different rate through a gel. Based on your understanding of gel composition and DNA migration, predict the relative rates of migration of the various DNA structures mentioned above.

During gel electrophoresis, DNA molecules can easily be separated according to size because all DNA molecules have the same charge-to-mass ratio and the same shape (long rod). Would you expect RNA molecules to behave in the same manner as DNA during gel electrophoresis? Why or why not?

How are the carbon and nitrogen atoms of the sugars, purines, and pyrimidines numbered?

See all solutions

Recommended explanations on Biology Textbooks

View all explanations

What do you think about this solution?

We value your feedback to improve our textbook solutions.

Study anywhere. Anytime. Across all devices.

Sign-up for free