Define and indicate the significance of (a) Okazaki fragments, (b) DNA ligase, and (c) primer RNA during DNA replication.

Short Answer

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Answer: In DNA replication, Okazaki fragments are short sequences of DNA formed on the lagging strand, allowing proper replication of the entire genetic information. DNA ligase joins these fragments together by forming phosphodiester bonds to create a continuous DNA strand. Primer RNA is a short segment that serves as a starting point for DNA synthesis, enabling DNA polymerase to initiate replication and accurately replicate the genetic information within the DNA molecule.

Step by step solution

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(a) Okazaki Fragments

Okazaki fragments are short sequences of DNA, typically around 100-200 nucleotides long in eukaryotes and 1000-2000 nucleotides long in prokaryotes. They are a result of the lagging strand synthesis during DNA replication. Since DNA replication occurs in the 5' to 3' direction, the lagging strand is synthesized in a discontinuous manner through the formation of these short fragments. Later, these fragments are joined together to form a continuous strand. The significance of Okazaki fragments is that they enable the proper replication of DNA on the lagging strand, ensuring that the entirety of the genetic information is preserved in the newly synthesized DNA molecule.
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(b) DNA Ligase

DNA ligase is an essential enzyme in the DNA replication process. Its primary role is to join together the Okazaki fragments that are synthesized on the lagging strand. DNA ligase accomplishes this by forming phosphodiester bonds between the adjacent fragments, thereby creating a continuous DNA strand. This process is crucial for maintaining the integrity and continuity of the genetic information, as it ensures the accurate replication of the entire DNA molecule.
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(c) Primer RNA

Primer RNA is a short segment of RNA that serves as a starting point for DNA synthesis during the DNA replication process. DNA polymerase, the enzyme responsible for synthesizing new DNA strands, cannot initiate synthesis on its own; it requires a primer to provide a free 3' hydroxyl group to which it can add new nucleotides. Primer RNA is synthesized by an enzyme called primase, which creates a short RNA sequence complementary to the DNA strand being replicated. Once the primer is in place, DNA polymerase can begin to extend the new DNA strand. The significance of primer RNA during DNA replication is that it provides the necessary starting point for DNA synthesis, allowing for the accurate replication of the genetic information within the DNA molecule.

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Most popular questions from this chapter

Prokaryotic Okazaki fragments are in the range of 1200 nucleotides, while eukaryotic fragments are much shorter, more in the range of \(100-150\) nucleotides. Balakrishnan and Bambara (2013) suggest that the shorter length of Okazaki fragments is determined by nucleosome periodicity. Design an experiment to determine whether or not the length of Okazaki fragments in eukaryotes is dependent on nucleosomes being present on \(\mathrm{J}\)

Distinguish between (a) unidirectional and bidirectional synthesis, and (b) continuous and discontinuous synthesis of DNA.

You have generated a mutant strain of eukaryotic cells that constitutively express proteins required for translesion DNA synthesis (TLS). Would these cells have a mutator phenotype? Explain. One of the strains that you are working with shows an additional mutation whereby the processivity of a TLS polymerase is increased. What would be the consequence of this mutation?

In this chapter, we focused on how DNA is replicated and synthesized. We also discussed recombination at the DNA level and the phenomenon of gene conversion. Along the way, we encountered many opportunities to consider how this information was acquired. On the basis of these discussions, what answers would you propose to the following fundamental questions? (a) What is the experimental basis for concluding that DNA replicates semiconservatively in both prokaryotes and eukaryotes? (b) How was it demonstrated that DNA synthesis occurs under the direction of DNA polymerase III and not polymerase I? (c) How do we know that in vivo DNA synthesis occurs in the \(5^{\prime}\) to \(3^{\prime}\) direction? (d) How do we know that DNA synthesis is discontinuous on one of the two template strands? (e) What observations reveal that a "telomere problem" exists during eukaryotic DNA replication, and how did we learn of the solution to this problem?

What would be the impact of the loss of processivity on DNA Pol III?

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