Chapter 13: Problem 18
What was the initial evidence for the existence of mRNA?
Chapter 13: Problem 18
What was the initial evidence for the existence of mRNA?
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Get started for freeM. Klemke et al. (2001) discovered an interesting coding phenomenon in which an exon within a neurologic hormone receptor gene in mammals appears to produce two different protein entities (XL \(\alpha\) s, ALEX). Following is the DNA sequence of the exon's \(5^{\prime}\) end derived from a rat. The lowercase letters represent the initial coding portion for the XL \(\alpha\)s protein, and the uppercase letters indicate the portion where the ALEX entity is initiated. (For simplicity, and to correspond with the RNA coding dictionary, it is customary to represent the noncoding, nontemplate strand of the DNA segment.) \(5^{\prime}-\) gtcccaaccatgcccaccgatcttccgcctgcttctgaagATGCGGGCCCAG (a) Convert the noncoding DNA sequence to the coding RNA sequence. (b) Locate the initiator codon within the XL \(\alpha\) segment. (c) Locate the initiator codon within the ALEX segment. Are the two initiator codons in frame? (d) Provide the amino acid sequence for each coding sequence. In the region of overlap, are the two amino acid sequences the same? (e) Are there any evolutionary advantages to having the same DNA sequence code for two protein products? Are there any disadvantages?
A glycine residue is in position 210 of the tryptophan synthetase enzyme of wild-type \(E .\) coli. If the codon specifying glycine is GGA, how many single- base substitutions will result in an amino acid substitution at position \(210 ?\) What are they? How many will result if the wild-type codon is GGU?
Recent observations indicate that alternative splicing is a common way for eukaryotes to expand their repertoire of gene functions. Studies indicate that approximately 50 percent of human genes exhibit alternative splicing and approximately 15 percent of disease-causing mutations involve aberrant alternative splicing. Different tissues show remarkably different frequencies of alternative splicing, with the brain accounting for approximately 18 percent of such events (Xu et al., 2002 . Nuc. Acids Res. \(30: 3754-3766\) ). (a) Define alternative splicing and speculate on the evolutionary strategy alternative splicing offers to organisms. (b) Why might some tissues engage in more alternative splicing than others?
Present an overview of various forms of posttranscriptional processing in eukaryotes. For each, provide an example.
Substitution RNA editing is known to involve either C-to-U or A-to-I conversions. What common chemical event accounts for each?
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