Imagine that you are interested in a protein that interacts with proteins of the cytoskeleton in human epithelial cells. Describe an experimental protocol based on the yeast two-hybrid system that would allow you to identify proteins that might interact with your protein of interest.

Short Answer

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To identify proteins interacting with the protein of interest through the yeast two-hybrid system, first clone the gene encoding the protein of interest into the DNA-binding domain of a hybrid protein in a yeast two-hybrid vector. Prepare a yeast two-hybrid library of cDNAs from human epithelial cells, clone these into the activation domain of another hybrid protein in another vector. Co-transform these vectors into yeast cells, and select for interactions (which activate a reporter gene) by growing the cells on selective agar plates. The protein interactions can be determined by sequencing the cDNA associated with growing colonies of yeast. Validate these interactions through reciprocal assays or other suitable methods.

Step by step solution

01

Cloning of the protein of interest

The gene encoding the protein of interest should be cloned into the DNA-binding domain of a hybrid protein in a yeast two-hybrid vector. This produces a fusion protein.
02

Preparing the yeast two-hybrid Library

Prepare a yeast two-hybrid library of cDNAs obtained from human epithelial cells. These cDNAs should be cloned into the activation domain of another hybrid protein in a separate yeast two-hybrid vector.
03

Transformation into Yeast Cells

The yeast two-hybrid vector containing the gene of interest and the cDNA library need to be co-transformed into suitable yeast cells.
04

Selection for Protein Interactions

After transformation, grow the yeast cells on selective agar plates that only allow the growth of yeast cells where the two hybrid proteins interact leading to the activation of a reporter gene. These interactions suggest a protein-protein interaction between the protein of interest and the protein encoded by the cDNA.
05

Identification of Interacting Proteins

The yeast colonies growing on the selective plates are isolated, and the interacting proteins are identified by sequencing the cDNA.
06

Validation of Protein Interactions

Interactions can be validated by reciprocal yeast two-hybrid assays, co-immunoprecipitation or other suitable methods

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