Search the National Center for Biotechnology Information (NCBI) website at http://www. nchi.nlm. nih.gov/sites/entrez?db=Genome to discover the number of organisms whose genome sequences have been completed. Explore the rich depository of sequence information available here by selecting one organism from the list and browsing through the contents available.

Short Answer

Expert verified
The exercise does not have a definitive short answer as it requires you to navigate a website and the data varies over time. The answer would be the total count of completed genome sequences found on the NCBI website at the given time and any interesting genomic information about the selected organism.

Step by step solution

01

Access the NCBI website

First, go to the website 'http://www. nchi.nlm. nih.gov/sites/entrez?db=Genome'. Verify that the URL is correct in order to avoid any error during the navigation.
02

Search for Information

Look for the number of organisms whose genome sequences have been completed on the site. This data is typically located on a stats page, but the exact location may vary as websites can change over time.
03

Select an Organism

Choose one organism from the list presented on the website. The choice can be made based on personal preference or at random.
04

Explore genomic data

Browse through the genomic information available for the selected organism. This might involve exploring various tabs or sections under the organism's profile, depending on the formatting of the web page.

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Key Concepts

These are the key concepts you need to understand to accurately answer the question.

Bioinformatics
Bioinformatics is an interdisciplinary field that develops methods and software tools for understanding biological data. In the realm of genomics, bioinformatics plays a critical role. This field merges biology, computer science, and information technology to analyze and interpret genetic information.

For a beginner navigating the NCBI website, understanding the scope of bioinformatics is a game-changer. This field is responsible for creating the very databases you browse when looking for genomic sequences. It also provides the computational tools, such as sequence aligners or phylogenetic tree builders, which are crucial for genomic data analysis. Moreover, bioinformatics is pivotal in managing and curating the vast amounts of genomic data to ensure that researchers around the world have access to accurate and useful genetic information.
Genomic Data Analysis
Genomic data analysis involves the examination and interpretation of data from genome sequencing projects. This analysis encompasses a variety of bioinformatics techniques and tools that aid in mapping and comparing genetic material.

When a student embarks on the exploration of an organism's genome on NCBI, they delve into a subset of genomic data analysis. Searching the finished genome sequences and selecting one organism is the first step in a broader analysis process. Breaking down the sequence data into readable and interpretable parts — identifying genes, predicting functions, or analyzing mutations — are all part of the larger genomic data analysis field. Students should recognize that the data they see on NCBI is the culmination of many scientists' analytical efforts, using bioinformatics tools to compile, annotate, and make sense of the raw sequencing data.
Educational Research in Genomics
Educational research in genomics is geared towards understanding how to best teach and learn about genomics. This research aims to design instructional materials and experiences that make complex genomic concepts accessible to students.

It's critical for educational platforms to ensure that genomic information is presented in a manner that is not overwhelming for learners. These resources often integrate interactive elements, such as choosing an organism on NCBI and exploring its genomic data, to enhance understanding. By incorporating step-by-step instructions, like the ones provided for using the NCBI database, learners can more readily engage with the material. Ultimately, educational research in genomics fosters the development of resources that support the step-by-step approach, allowing students to tackle complex concepts at their own pace and build a strong foundation in genomics.

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Most popular questions from this chapter

A DNA fragment isolated from an EcoRI digest of genomic DNA was combined with a plasmid vector linearized by EcoRI digestion so that sticky ends could anneal. Phage \(T 4\) DNA ligase was then added to the mixture. List all possible products of the ligation reaction.

Yeast (Saccharomyces cerevisiae) has a genome size of \(1.21 \times 10^{7}\) bp. If a genomic library of yeast DNA was constructed in a vector capable of carrying 16 -kbp inserts, how many individual clones would have to be screened to have a \(99 \%\) probability of finding a particular fragment?

Imagine that you are interested in a protein that interacts with proteins of the cytoskeleton in human epithelial cells. Describe an experimental protocol based on the yeast two-hybrid system that would allow you to identify proteins that might interact with your protein of interest.

Describe an experimental protocol based on DNA microarrays (gene chips) that would allow you to compare gene expression in anaerobically grown yeast versus aerobically grown yeast.

Combinatorial chemistry can be used to synthesize polymers such as oligopeptides or oligonucleotides. The number of sequence possibilities for a polymer is given by \(x^{y}\), where \(x\) is the number of different monomer types (for example, 20 different amino acids in a protein or 4 different nucleotides in a nucleic acid) and \(y\) is the number of monomers in the oligomers. a. Calculate the number of sequence possibilities for RNA oligomers 15 nucleotides long. b. Calculate the number of amino acid sequence possibilities for pentapeptides.

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