Describe the labeling pattern that would result in the glyoxylate cycle if a plant were fed acetyl-CoA labeled at the \(-\mathrm{CH}_{3}\) carbon.

Short Answer

Expert verified
If the \(-\mathrm{CH}_{3}\) carbon of acetyl-CoA is labeled, it will end up in the second carbon of the malate produced in the glyoxylate cycle. This is because the labeled carbon enters the cycle as part of an acetyl-CoA molecule, which is used to produce malate.

Step by step solution

01

Introduction to the Glyoxylate cycle

The glyoxylate cycle is a series of reactions in the plant metabolism which allows the synthesis of carbohydrates from fatty acids. It is similar to the citric acid cycle (also known as the Krebs cycle), but with a crucial difference: it bypasses the stages of the citric acid cycle that lead to the loss of carbon atoms as CO2, retaining all the carbons within the cycle.
02

Entry of Acetyl-CoA into the cycle

In the glyoxylate cycle, two molecules of acetyl-CoA (each with two carbon atoms) enter the cycle. Each molecule of acetyl-CoA combines with a molecule of oxaloacetate (a four-carbon molecule) to form citrate (a six-carbon compound). This step is catalyzed by the enzyme citrate synthase.
03

Conversion of Citrate to Isocitrate

The citrate produced in the previous step doesn't go directly into the glyoxylate cycle. First, it undergoes an isomerization reaction to form isocitrate, via the intermediate compound cis-aconitate.
04

Splitting the Isocitrate into Glyoxylate and Succinate

The enzyme isocitrate lyase then splits isocitrate into glyoxylate and succinate (each with four carbon atoms). This is where the glyoxylate cycle differs from the Krebs cycle.
05

Conversion of glyoxylate and acetyl-CoA to malate

The glyoxylate produced in the previous step can react with another molecule of acetyl-CoA, forming malate (a four-carbon molecule). This reaction is catalyzed by the enzyme malate synthase.
06

Interpretation of labeling pattern

Now, if the \(-\mathrm{CH}_{3}\) carbon of acetyl-CoA was labeled, this label will progress through the cycle. The labeled carbon will end up in the second carbon of the malate molecule because of the action of malate synthase. The malate can then be converted to glucose via gluconeogenesis, thus carrying the label into the glucose molecule.

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Key Concepts

These are the key concepts you need to understand to accurately answer the question.

Citric Acid Cycle
Often referred to as the central hub of metabolic pathways, the Citric Acid Cycle is a crucial component of cellular respiration. Also known as the Krebs Cycle, it plays a pivotal role in the conversion of carbohydrates, fats, and proteins into carbon dioxide and water to generate energy.

However, it's not just about energy production; the Citric Acid Cycle also provides precursor metabolites for various biosynthetic pathways. It is a sequence of enzymatic reactions that take place in the mitochondria of cells, where acetyl-CoA, derived from sugars, fats, and proteins, is oxidized to CO2. In the process, various energy-rich molecules, such as ATP (adenosine triphosphate), NADH (nicotinamide adenine dinucleotide), and FADH2 (flavin adenine dinucleotide), are formed which are vital for many cellular functions.
  • Acetyl-CoA enters the cycle and reacts with oxaloacetate to form citrate.
  • Citrate is then rearranged and sequentially oxidized, releasing two molecules of CO2.
  • The cycle completes as oxaloacetate is regenerated, ready to begin again.
Different from the glyoxylate cycle, the Citric Acid Cycle has decarboxylation steps which are absent in the former, making it unique for non-plant organisms.
Gluconeogenesis
Gluconeogenesis is a metabolic pathway that results in the generation of glucose from certain non-carbohydrate carbon substrates. From an evolutionary perspective, it is a critical process allowing organisms to maintain adequate blood sugar levels during fasting or strenuous exercise.

It's essentially the reverse of glycolysis, occurring mainly in the liver and kidneys. The pathway converts pyruvate and other metabolites like lactate, glycerol, and glucogenic amino acids into glucose. Despite sharing several steps with glycolysis, gluconeogenesis contains unique enzymes for irreversible steps to allow directional control.
  • Important substrates for gluconeogenesis include lactate, glycerol, and glucogenic amino acids.
  • It starts from pyruvate and ends with the production of glucose.
  • Energy in the form of ATP and GTP is required to drive this endergonic process.
For plants, gluconeogenesis is particularly crucial as it enables the conversion of lipids into sugars during seed germination, a process linked to the glyoxylate cycle, where intermediates can serve as precursors for glucose synthesis.
Plant Metabolism
Plant metabolism encompasses all the biochemical processes responsible for sustaining plant life and growth. Unlike animals, plants can photosynthesize, converting light energy into chemical energy. Moreover, they have unique pathways for the conversion of nutrients to energy and building blocks for growth.

Several pathways are exclusive to plants or have significant differences from those found in animals, one of which is the glyoxylate cycle. This critical pathway allows plants to convert fatty acids to sugars, which is vital during germination when seedlings rely on stored fats before they can photosynthesize.
  • In the glyoxylate cycle, plants bypass the two CO2-releasing steps of the Citric Acid Cycle, conserving carbon molecules for sugar production.
  • This process is pivotal during periods when photosynthesis cannot occur, such as seed germination or in certain plant tissues that lack chlorophyll.
  • The products of the glyoxylate cycle often serve as precursors for the synthesis of glucose via gluconeogenesis.
Understanding plant metabolism is essential for improving crop yields and dealing with food security issues, as it allows us to manipulate pathways for enhanced energy production and storage in plants.
Isocitrate Lyase
Isocitrate lyase is a remarkable enzyme that plays a key role in the glyoxylate cycle. It catalyzes the cleavage of isocitrate into succinate and glyoxylate, thereby deviating from the traditional Citric Acid Cycle.

Found in plants, bacteria, fungi, and some protists, but absent in animals, isocitrate lyase is essential for organisms that utilize the glyoxylate cycle.
  • The action of this enzyme is crucial for enabling the net synthesis of carbohydrates from fatty acids.
  • It is the first unique enzyme in the glyoxylate cycle, marking a departure from the Citric Acid Cycle.
  • The enzyme's activity can be an indicator of the glyoxylate cycle's operation within an organism.
In the context of the exercise, labeled acetyl-CoA at the -CH_3 carbon entering the glyoxylate cycle would pass through isocitrate lyase, where the label would be retained in the glyoxylate product and eventually in malate, illustrating the enzyme's importance in tracing carbon flow through this unique metabolic pathway.

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Most popular questions from this chapter

Describe the labeling pattern that would result from the introduction into the TCA cycle of glutamate labeled at \(\mathrm{C}_{\gamma}\) with \(^{14} \mathrm{C}\)Describe the labeling pattern that would result from the introduction into the TCA cycle of glutamate labeled at \(\mathrm{C}_{\gamma}\) with \(^{14} \mathrm{C}\)

(Integrates with Chapter 3 .) Aconitase catalyzes the citric acid cycle reaction: Citrate \(\rightleftharpoons\) isocitrate The standard free energy change, \(\Delta G^{\circ \prime}\), for this reaction is +6.7 \(\mathrm{kJ} / \mathrm{mol}\). However, the observed free energy change \((\Delta G)\) for this reaction in pig heart mitochondria is \(+0.8 \mathrm{kJ} / \mathrm{mol}\). What is the ratio of [isocitrate]/[citrate] in these mitochondria? If [isocitrate] = \(0.03 \mathrm{m} M,\) what is [citrate]?

In addition to fluoroacetate, consider whether other analogs of TCA cycle metabolites or intermediates might be introduced to inhibit other, specific reactions of the cycle. Explain your reasoning.

Aconitase is rapidly inactivated by \(2 R, 3 R\) -fluorocitrate, which is produced from fluoroacetate in the citrate synthase reaction. Interestingly, inactivation by fluorocitrate is accompanied by stoichiometric release of fluoride ion (i.e., one F-ion is lost per aconitase active site \() .\) This observation is consistent with "mechanism-based inactivation" of aconitase by fluorocitrate. Suggest a mechanism for this inactivation, based on formation of 4 -hydroxy-trans-aconitate, which remains tightly bound at the active site. To assess your answer, consult this reference: Lauble, H., Kennedy, M., et al., 1996. The reaction of fluorocitrate with aconitase and the crystal structure of the enzyme-inhibitor complex. Proceedings of the National Academy of Sciences \(93: 13699-13703\)

Glycolysis, the pyruvate dehydrogenase reaction, and the TCA cycle result in complete oxidation of a molecule of glucose to \(\mathrm{CO}_{2}\). Review the calculation of oxidation numbers for individual atoms in any molecule, and then calculate the oxidation numbers of the carbons of glucose, pyruvate, the acetyl carbons of acetyl-CoA, and the metabolites of the TCA cycle to convince yourself that complete oxidation of glucose involves removal of 24 electrons and that each acetyl-CoA through the TCA cycle gives up 8 electrons.

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