In the course of events triggering apoptosis, a fatty acid chain of cardiolipin undergoes peroxidation to release the associated cytochrome \(c .\) Lipid peroxidation occurs at a double bond. Suggest a mechanism for the reaction of hydrogen peroxide with an unsaturation in a lipid chain, and identify a likely product of the reaction.

Short Answer

Expert verified
The mechanism involves hydrogen peroxide acting as a nucleophile and attacking the double bond in the fatty acid. The process goes through the formation of a hydroperoxide group and ends up with a lipid hydroperoxide product.

Step by step solution

01

- Understand lipid peroxidation

Lipid peroxidation refers to the oxidative degradation of lipids. It's a process where free radicals 'steal' electrons from the lipids in cell membranes, resulting in cell damage. This process proceeds through a free radical chain reaction mechanism. In this context, a double bond in the fatty acid chain of cardiolipin will be acted upon by hydrogen peroxide, which acts as an oxidant.
02

- Suggested mechanism of reaction

The hydrogen peroxide initially acts as a nucleophile, attacking the double bonded carbons. The bond electrons leave the carbon and bond with an oxygen atom of hydrogen peroxide, leading to the formation of a peroxide linkage (-O-O-), and water. Then, the peroxide bond breaks, forming a radical on the oxygen atom attached to the carbon. This unstable species extracts a hydrogen atom from an adjacent carbon (with its electrons), forming a carbon-centered radical. Finally, there is a rearrangement or reaction with another free radical to stabilize the molecule.
03

- Identify product

A likely product of this interaction between hydrogen peroxide and a carbon double bond in the fatty acid chain is a lipid hydroperoxide, which is a fatty acid molecule with a peroxide (-O-O-) linkage in place of a carbon double bond.

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Key Concepts

These are the key concepts you need to understand to accurately answer the question.

Apoptosis
Apoptosis, often referred to as programmed cell death, is a highly regulated process that is critical for maintaining health by eliminating old, unneeded, or damaged cells without causing harm to the surrounding tissue. It involves a series of biochemical events leading to characteristic cell changes and eventual death, such as cell shrinkage, chromatin condensation, and DNA fragmentation.

One key event in the induction of apoptosis is the release of cytochrome c from the mitochondria into the cytosol. This occurs when certain proteins in the mitochondrial outer membrane, such as Bcl-2, are no longer able to contain cytochrome c within the intermembrane space. The mechanism through which cytochrome c release is triggered includes lipid peroxidation, which can destabilize the membrane and facilitate the release of apoptotic factors.
Cytochrome c
Cytochrome c is a small, highly conserved protein found within the intermembrane space of mitochondria. It plays a crucial role in the electron transport chain, where it facilitates electron transfer between Complex III and Complex IV. Nonetheless, its function extends beyond energy production. In response to pro-apoptotic signals, cytochrome c is released into the cytoplasm, where it binds to apoptotic protease activating factor-1 (Apaf-1).

This interaction leads to the formation of the apoptosome, a protein complex that activates caspases, which are the enzymes that execute apoptosis by cleaving specific cellular substrates. Therefore, the release of cytochrome c from mitochondria can be seen as a point of no return in the initiation of programmed cell death.
Free Radical Chain Reaction
Free radical chain reactions are a series of chemical reactions that involve free radicals, which are highly reactive, uncharged molecules with an unpaired valence electron. These reactions are characterized by initiation, propagation, and termination steps. In the context of lipid peroxidation:
  • The initiation step involves the generation of a lipid radical, typically through the reaction of a lipid molecule with a reactive oxygen species (ROS), like hydroxyl radicals or hydrogen peroxide.
  • The propagation phase sees the lipid radical reacting with oxygen to form a lipid peroxide radical, which can then take a hydrogen atom from another lipid molecule to form a lipid hydroperoxide and another lipid radical, perpetuating the cycle.
  • In the termination phase, two radicals may react together to form a stable, non-radical product, thereby ending the chain reaction.
Free radicals can damage cell components, leading to loss of structure and function, and are implicated in the pathogenesis of many diseases, as well as the aging process.
Lipid Hydroperoxide
Lipid hydroperoxides are the primary products of lipid peroxidation, an early marker of oxidative stress and damage to cells. Structurally, they consist of a fatty acid chain with a hydroperoxide group (-O-O-H) in place of a hydrogen atom at the site of the unsaturated carbon bond.

The lipid hydroperoxide itself can be relatively stable, but it represents a continued risk to cellular integrity. Under certain conditions, it can decompose into a wide variety of secondary products, including aldehydes like malondialdehyde (MDA), which can form adducts with DNA and proteins, further potentiating cellular damage and disruption of cellular functions.

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Most popular questions from this chapter

Write a balanced equation for the reduction of molecular oxygen by reduced cytochrome \(c\) as carried out by Complex IV (cytochrome oxidase \()\) of the electron-transport pathway. a. What is the standard free energy change \(\left(\Delta G^{\circ \prime}\right)\) for this reaction if \(\Delta \mathscr{E}_{\mathrm{o}}^{\prime}\) cyt \(c\left(\mathrm{Fe}^{3+}\right) / \mathrm{cyt} c\left(\mathrm{Fe}^{2+}\right)=+0.254\) volts and \\[ \mathscr{E}_{\mathrm{o}}^{\prime}\left(\frac{1}{2} \mathrm{O}_{2} / \mathrm{H}_{2} \mathrm{O}\right)=0.816 \text { volts } \\] b. What is the equilibrium constant \(\left(K_{\mathrm{eq}}\right)\) for this reaction? c. Assume that (1) the actual free energy release accompanying cytochrome \(c\) oxidation by the electron-transport pathway is equal to the amount released under standard conditions (as calculated in part a), (2) this energy can be converted into the synthesis of ATP with an efficiency \(=0.6\) (that is, \(60 \%\) of the energy released upon cytochrome \(c\) oxidation is captured in ATP synthesis), and (3) the reduction of 1 molecule of \(\mathrm{O}_{2}\) by reduced cytochrome \(c\) leads to the phosphorylation of 2 equivalents of ATP. Under these conditions, what is the maximum ratio of [ATP]/ \([\mathrm{ADP}]\) attainable by oxidative phosphorylation when \(\left[\mathrm{P}_{\mathrm{i}}\right]=3 \mathrm{m} M ?\) (Assume \(\Delta G^{\circ}\) for ATP synthesis \(=+30.5 \mathrm{kJ} / \mathrm{mol} .\)

For the following redox reaction, \\[ \mathrm{NAD}^{+}+2 \mathrm{H}^{+}+2 e^{-} \longrightarrow \mathrm{NADH}+\mathrm{H}^{+} \\] suggest an equation (analogous to Equation 20.12 ) that predicts the pH dependence of this reaction, and calculate the reduction potential for this reaction at \(\mathrm{pH} 8\)

Consider the oxidation of NADH by molecular oxygen as carried out via the electron-transport pathway \\[ \mathrm{NADH}+\mathrm{H}^{+}+\frac{1}{2} \mathrm{O}_{2} \longrightarrow \mathrm{NAD}^{+}+\mathrm{H}_{2} \mathrm{O} \\] a. What is the standard free energy change \(\left(\Delta G^{\circ}\right)\) for this reaction if \(\mathscr{E}_{\mathrm{o}}^{\prime}\left(\mathrm{NAD}^{+} / \mathrm{NADH}\right)=-0.320 \mathrm{V}\) and \(\mathscr{E}_{\mathrm{o}}^{\prime}\left(\mathrm{O}_{2} / \mathrm{H}_{2} \mathrm{O}\right)=\) \\[ +0.816 \mathrm{V} \\] b. What is the equilibrium constant \(\left(K_{\mathrm{cq}}\right)\) for this reaction? c. Assume that (1) the actual free energy release accompanying NADH oxidation by the electron-transport pathway is equal to the amount released under standard conditions (as calculated in part \(a),(2)\) this energy can be converted into the synthesis of ATP with an efficiency \(=0.75\) (that is, \(75 \%\) of the energy released upon NADH oxidation is captured in ATP synthesis), and (3) the oxidation of 1 NADH leads to the phosphorylation of 3 equivalents of ATP. Under these conditions, what is the maximum ratio of [ATP]/ \([\mathrm{ADP}]\) attainable by oxidative phosphorylation when \(\left[\mathrm{P}_{\mathrm{i}}\right]=2 \mathrm{m} M ?\) (Assume \(\Delta G^{\circ \prime}\) for ATP synthesis \(=+30.5 \mathrm{kJ} / \mathrm{mol}\).)

Considering that all other dehydrogenases of glycolysis and the TCA cycle use NADH as the electron donor, why does succinate dehydrogenase, a component of the TCA cycle and the electron transfer chain, use FAD as the electron acceptor from succinate, rather than \(\mathrm{NAD}^{+}\) ? Note that there are two justifications for the choice of FAD here-one based on energetics and one based on the mechanism of electron transfer for FAD versus \(\mathrm{NAD}^{+}\).

Assume that the free energy change \((\Delta G)\) associated with the movement of 1 mole of protons from the outside to the inside of a bacterial cell is \(-23 \mathrm{kJ} / \mathrm{mol}\) and \(3 \mathrm{H}^{+}\) must cross the bacterial plasma membrane per ATP formed by the bacterial \(\mathrm{F}_{1} \mathrm{F}_{0}-\mathrm{ATP}\) synthase. ATP synthesis thus takes place by the coupled process: $$3 \mathrm{H}_{\mathrm{out}}^{+}+\mathrm{ADP}+\mathrm{P}_{\mathrm{i}} \rightleftharpoons 3 \mathrm{H}_{\mathrm{in}}^{+}+\mathrm{ATP}+\mathrm{H}_{2} \mathrm{O}$$ a. If the overall free energy change \(\left(\Delta G_{\text {overall }}\right)\) associated with ATP synthesis in these cells by the coupled process is \(-21 \mathrm{kJ} / \mathrm{mol}\), what is the equilibrium constant \(\left(K_{\mathrm{eq}}\right)\) for the process? b. What is \(\Delta G_{\text {synthesis }},\) the free energy change for ATP synthesis, in these bacteria under these conditions? c. The standard free energy change for ATP hydrolysis ( \(\Delta G^{\text {o' }}\) hydrolysis) is \(-30.5 \mathrm{kJ} /\) mol. If \(\left[\mathrm{P}_{\mathrm{i}}\right]=2 \mathrm{m} M\) in these bacterial cells, what is the \([\mathrm{ATP}] /[\mathrm{ADP}]\) ratio in these cells?

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