HtrA proteases are dual-function chaperone-protease protein quality control systems. The protease activity of HtrA proteases depends on a proper spatial relationship between the Asp-His-Ser catalytic triad. Propose a mechanism for the temperature-induced switch of HtrA proteases from chaperone function to protease function.

Short Answer

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The switch from chaperone function to protease function in HtrA proteases during temperature changes is dictated by structural changes that expose the Asp-His-Ser catalytic triad. These changes, induced by increased temperature, facilitate a switch in function by exposing the protease domain, activating the protease function. Later, with the cessation of stress condition or temperature decline, HtrA proteases can switch back to their original chaperone function as they return to their original conformation.

Step by step solution

01

Understand the Role of the Asp-His-Ser Catalytic Triad

First, it needs to be understood that the protease function of HtrA proteases rely on the correct spatial arrangement of the Asp29, His99 and Ser221 residues, commonly known as the Asp-His-Ser catalytic triad. Here, the Asp29 residue acts as a catalytic nucleophile, His99 as the general acid/base and Ser221 as the general base. Protease activation involves the formation of these catalytic triads.
02

Explaining the Role of Temperature Variation

Under normal conditions, HtrA proteins function as chaperones, preventing the aggregation of unfolded proteins. However, when subjected to stress conditions such as increased temperatures, HtrA proteins undergo structural alterations. These alterations lead to a rearrangement of the protease domain, exposing the catalytic triad and enabling proteolysis.
03

Propose the Mechanism for Temperature-Induced Switch

On the basis of the above points, one can propose that temperature-induced structural changes cause a rearrangement of the protease domain, exposing the Asp-His-Ser catalytic triad. This rearrangement, thus, switches Htra proteases from the chaperone function to the protease function. Further, these proteins would switch back to their chaperoning function once the stress condition subsides and the proteins return to their original conformation, hiding the catalytic triad again.

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Key Concepts

These are the key concepts you need to understand to accurately answer the question.

Asp-His-Ser Catalytic Triad
The Asp-His-Ser catalytic triad is a classic feature in many proteases, including the family of HtrA proteins. This triad is composed of three amino acids: aspartate (Asp), histidine (His), and serine (Ser) that are essential for the enzyme's catalytic activity. The function of this trio centers around a choreographed chemical interaction where each amino acid plays a crucial role.

The Asp serves as the nucleophile, initiating the proteolytic process. The His acts as a general acid/base, facilitating the transfer of a proton, while the Ser serves as the attacking group that breaks the peptide bond in substrates. These three side chains are typically located near each other in the three-dimensional structure of the enzyme, forming a charge-relay system that is highly efficient at cleaving peptide bonds.

When temperature or other factors induce structural changes, this triad can become exposed or repositioned, switching the HtrA protein's function from a chaperone to an active protease. This is just a glimpse of the intricate dance that these molecular players perform in the cellular environment, seamlessly shifting their roles in response to the needs of the cell.
Protein Quality Control Systems
Protein quality control systems are vital for maintaining the health and functionality of cells. These systems recognize and refold misfolded proteins or facilitate their degradation if they are beyond repair. HtrA proteases are an integral part of these quality control mechanisms.

In their role as chaperones, HtrA proteins help to prevent the aggregation of misfolded proteins, ensuring they maintain or return to a functional state. This is especially crucial under stress conditions, such as high temperature, that can increase the rate of protein misfolding.

The unique aspect of HtrA proteases is their ability to switch to a proteolytic function upon sensing that a misfolded protein can't be salvaged. This switch involves temperature-induced structural changes that expose the Asp-His-Ser catalytic triad. Once the triad is exposed, the protease can then cleave the damaged proteins, preventing their accumulation and the potential cellular damage they could cause.
Temperature-Induced Structural Changes
Temperature plays a critical role in the structure and function of proteins. The three-dimensional conformation of proteins is sensitive to temperature variations, which can lead to structural changes. In the case of HtrA proteases, increased temperature can induce a structural shift that enables these enzymes to adopt a proteolytic role.

At a molecular level, higher temperatures increase kinetic energy, leading to more vigorous atomic movements. This can disrupt the delicate equilibrium that holds proteins in their functional shapes. For HtrA proteins, this means the protective shielding around the Asp-His-Ser triad is destabilized, making the triad accessible for its protease activity to ensue.

Temperature-induced changes are not permanent and are reversible; once the temperature returns to normal, HtrA proteases can revert to their chaperone state. This dynamic ability to respond to thermal stress underscores the resilience and adaptability of cellular systems to maintain homeostasis in the face of environmental challenges.

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Most popular questions from this chapter

Protein molecules, like all molecules, can be characterized in terms of general properties such as size, shape, charge, solubility/hydrophobicity, Consider the influence of each of these general features on the likelihood of whether folding of a particular protein will require chaperone assistance or not. Be specific regarding just Hsp 70 chaperones or Hsp 70 chaperones and Hsp 60 chaperonins.

(Integrates with Chapter \(30 .\) ) In what ways are the mechanisms of action of EF-Tu/EF-Ts and DnaK/GrpE similar? What mechanistic functions do the ribosome A-site and DnaJ have in common?

The amino acid sequence deduced from the nucleotide sequence of a newly discovered human gene begins: MRSLLILVLCFLPLAALGK ... Is this a signal sequence? If so, where does the signal peptidase act on it? What can you surmise about the intended destination of this protein?

Fluorescence resonance energy transfer (FRET) is a spectroscopic technique that can be used to provide certain details of the conformation of biomolecules. Look up FRET on the Web or in an introductory text on FRET uses in biochemistry, and explain how FRET could be used to observe conformational changes in proteins bound to chaperonins such as GroEL. A good article on FRET in protein folding and dynamics can be found here: Haas, E., 2005. The study of protein folding and dynamics by determination of intramolecular distance distributions and their fluctuations using ensemble and single-molecule FRET measurements. ChemPhysChem \(6: 858-870 .\) Studies of GroEL using FRET analysis include the following: Sharma, S., et al., 2008. Monitoring protein conformation along the pathway of chaperonin-assisted folding. Cell \(133: 142-153\); and \(\mathrm{Lin}, \mathrm{Z},\) et al. \(, 2008 .\) GroEL stimulates protein folding through forced unfolding. Nature Structural and Molecular Biology \(15: 303-311\)

A common post-translational modification is removal of the universal N-terminal methionine in many proteins by Met-aminopeptidase. How might Met removal affect the half-life of the protein?

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