Tryptophan is not classified as a basic amino acid even though it has a heterocycle containing a nitrogen atom. Why is the N atom in the five-membered ring of tryptophan not readily protonated by acid?

Short Answer

Expert verified

The protonation of the nitrogen atom disrupts the aromaticity, making it a less favorable reaction.

Step by step solution

01

Basic amino acid

Amino acid comprising a second basic group, an amino acid, is termed a basic amino acid. Lysine and arginine are examples of a few basic amino acids.

02

Tryptophan

Tryptophan comes under the category of essential amino acids. The body cannot generate this amino acid, and it must be acquired via diet.

03

Reason for the nitrogen atom in the five-membered ring of tryptophan not readily protonated by acid

The electron pair indicated by the arrow in the first figure is delocalized on the bicyclic ring system, providing 10πelectrons. This makes the electron pair less available for donation and less basic.

Protonation of the nitrogen atom in tryptophan

The ring structure on tryptophan is aromatic as each atom comprises a p orbital. The aromaticity is disrupted due to the protonation of the nitrogen atom, thereby making it a less favorable reaction

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Most popular questions from this chapter

Consider the decapeptide angiotensin I.

  1. What products are formed when angiotensin I is treated with trypsin?
  2. What products are formed when angiotensin I is treated with chymotrypsin?
  1. Treatment of angiotensin I with ACE (the angiotensin-converting enzyme) cleaves only the amide bond with the carbonyl group derived from phenylalanine to afford two products.

The larger polypeptide is angiotensin II, a hormone that narrows blood vessels and increases blood pressure. Give the amino acid sequence of angiotensin II using threeletter abbreviations. ACE inhibitors are drugs that lower blood pressure by inhibiting the ACE enzyme (Problem 5.15).

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Devise a synthesis of threonine from diethyl acetamidomalonate.

Give the amino acid sequence of each peptide using the fragments obtained by partial hydrolysis of the peptide with acid.

  1. A tetrapeptide that contains Ala, Gly, His, and Tyr, which is hydrolyzed to the dipeptides His-Tyr, Gly-Ala, and Ala-His.
  2. A pentapeptide that contains Glu, Gly, His, Lys, and Phe, which is hydrolyzed to His-Gly-Glu, Gly-Glu-Phe, and Lys-His.

With reference to the following peptide:

(a) Identify the N-terminal and C-terminal amino acids.

(b) Name the peptide using one-letter abbreviations.

(c) Label all the amide bonds in the peptide backbone.

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